• From phenotype to receptor: validating physiological clustering of Escherichia coli phages through comprehensive receptor analysis
  • T. Kaneko, T. Osaka, M. Inagaki, K. Habe, T. Okabe, S. Tsuneda
  • Journal of Virology. 2025/09

• Isolation and characterization of novel bacteriophages targeting Stenotrophomonas maltophilia
  • W. Yamashita, Y. Sato, M. Imanaka, M. Kataoka, T.iSuzuki, A. H. Azam, S. Ojima, K. Hayakawa, S. Saito, Y. Moriyama, N. Ohmagari, M. Kurokawa, K. Mezaki, A. Tamura, L. Cui, J. Fujiki, H. Iwano, Y. Takahashi, K. Watashi, S. Tsuneda, K. Kiga
  • Scientific Reports. 15, 29743 2025/08

• Phage engineering to overcome bacterial Tmn immunity
  • W. Yamashita, K. Chihara, A. H. Azam, K. Kondo, S. Ojima, A. Tamura, M. Imanaka, F.L. Nobrega, Y. Takahashi, K. Watashi, S. Tsuneda, K. Kiga
  • Communications Biology. 8, 290 2025/02

• Novel Escherichia coli Phages Representing a Distinct Genus within Stephanstirmvirinae: Genome and Host Range Characteristics
  • T. Kaneko, J. Uchiyama, T. Osaka, S. Tsuneda
  • bioRxiv, 2025/02

• A Phage Collection Propagated in Escherichia coli K-12 Shows Broad Lytic Activity Against a Diverse Panel of Multidrug-Resistant Isolates
  • T. Kaneko, Y. Aiba, K. Miyanaga, L. Cui, S. Tsuneda
  • PHAGE : Therapy, Applications, and Research. 6:3. 2025/02

• Multilocus sequence typing, antimicrobial susceptibility, and phage discovery of motile Aeromonas species from the pond-cultured goldfish Carassius auratus on two farms in Japan
  • K. Fudeshima, K. Kitaoka, T. Kaneko, S. Yamamura, Y. Yamasaki, H. Mizutani, K. Miyanaga, Y. Tanji, N. Mano, S. Tsuneda
  • Fisheries Science, 2024/12

• Harnessing a T1 Phage-Derived Spanin for Developing Phage-Based Antimicrobial Development
  • W. Yamashita, S. Ojima, A. Tamura, A. H. Azam, K. Kondo, Z. Yuancheng, L. Cui, M. Shintani, M. Suzuki, Y. Takahashi, K. Watashi, S. Tsuneda, K. Kiga
  • BioDesign Research, 6, 0028. 2024/3

• Variation in growth rates between cultures hinders the cultiv a tion of ammonia-oxidizing bacteria
  • R. Isshiki, H. Fujitani, S. Tsuneda
  • FEMS Microbiology Letters 371 (2024): fnae013 2024/3

• Arg-73 of the RNA endonuclease MazF in Salmonella enterica subsp. arizonae contributes to guanine and uracil recognition in the cleavage sequence
  • T. Okabe, R. Aoi, A. Yokota, H. Tamiya-Ishitsuka, Y. Jiang, A. Sasaki, S. Tsuneda, N. Noda
  • Journal of Biological Chemistry 300.2 (2024). 2024/2

• Effects of Co-existing Heterotrophs on Physiology of and Nitrogen Metabolism in Autotrophic Nitrite-oxidizing Candidatus Nitrotoga
  • H. Ide, K. Ishii, Y. Takahashi, H. Fujitani, S. Tsuneda
  • Microbes and environments 38.4 (2023): ME23076. 2023/12

• Water-in-oil droplet-mediated method for detecting and isolating infectious bacteriophage particles via fluorescent staining
  • M. Hoshino, Y. Ota, T. Suyama, Y. Morishita, S. Tsuneda, N. Noda
  • Frontiers in Microbiology 14 (2023): 1282372. 2023/12

• Tailoring effective phage cocktails for long-term lysis of Escherichia coli based on physiological properties of constituent phages
  • T. Kaneko, T. Osaka, S. Tsuneda
  • PHAGE : Therapy, Applications, and Research. 4:3. 2023/09

• Characterisation of bacteria representing a novel Nitrosomonas clade: Physiology, genomics and distribution of missing ammonia oxidizer
  • S. Kikuchi, H. Fujitani, K. Ishii, R. Isshiki, Y. Sekiguchi, S. Tsuneda
  • Environmental Microbiology Reports. 15. 2023/08

• Establishment of isogenic induced pluripotent stem cells with or without pathogenic mutation for understanding the pathogenesis of myeloproliferative neoplasms
  • C. Liu, M. Imai, Y. Edahiro, S. Mano, H. Takei, M. Nudejima, A. Kurose, S. Morishita, M. Ando, S. Tsuneda, M. Araki, N. Komatsu
  • Experimental Hematology. 118. 2023/02

• Relationship between Phage Lytic Spectra and Sequence Types in Extended-Spectrum β-lactamase-Producing Escherichia coli isolated in Japan
  • S. Yamamura, K. Kitaoka, Y. Yamasaki, K. Fudeshima, K. Miyanaga, Y. Tanji, S. Tuneda
  • Japanese Journal of Infectious Diseases. 75(6) . 2022/11

• Nitrite Production by Nitrifying Bacteria in Urban Groundwater Used in a Chlorinated Public Bath System in Japan
  • Y. Takahashi, K. Ishii, Y. Kikkawa, K. Horikiri, S. Tsuneda
  • Microbes and Environments. 37(1) . 2022/10

• ldhA-induced persister in Escherichia coli is formed through accidental SOS response via intracellular metabolic perturbation
  • N. Yamamoto, Y. Ohno, S. Tsuneda
  • Medical Microbiology and Immunology. 66(225) . 2022/05

• Long-term limitation effects of Se(VI), Zn(II), and Ni(II) on start-up of the anammox process using gel carrier
  • K. Isaka, S. Nitta, D. Sugawara, H. Yamazaki, Y. Kimura, T. Osaka, S. Tsuneda
  • Frontiers in Bioengineering and Biotechnology. 10(1) . 2022/03

• Effect of inorganic carbon limitation on the nitrogen removal performance of the single-stage reactor containing anammox and nitritation gel carriers
  • K. Isaka, S. Nitta, T. Osaka, S. Tsuneda
  • Journal of Bioscience and Bioengineering. 133(70) . 2022/01

• Global identification of RsmA/N binding sites in Pseudomonas aeruginosa by in vivo UV CLIP-seq
  • K. Chihara, L. Barquist, K. Takasugi, N. Noda, S. Tsuneda
  • bioRxiv. . 2020/08

• 高温条件がアナモックスプロセスにおよぼす影響
  • 井坂和一，豊田透花，大前周平，高橋悠，大坂利文，常田聡
  • 化学工学論文集. 47(217) . 2021/12

• Microdroplet-based system for culturing of environmental microorganisms using FNAP-sort
  • K. Saito, Y. Ota, D. M. Tourlousse, S. Matsukura, H. Fujitani, M. Morita, S. Tsuneda & N. Noda
  • Scientific Reports. 11(1) . 2021/05

• Global identification of RsmA/N binding sites in Pseudomonas aeruginosa by in vivo UV CLIP-seq
  • K. Chihara, L. Barquist, K. Takasugi, N. Noda, S. Tsuneda
  • RNA Biology. 2021/04

• EB3L1 overexpression as a potential diagnostic marker of Philadelphia chromosome–negative myeloproliferative neoplasms
  • S. Morishita,H. Yasuda,S. Yamawaki,H. Kawaji,M. Itoh,Y. Edahiro,M. Imai,Y. Kogo,S. Tsuneda,A. Ohsaka,Y. Hayashizaki,M. Ito,M. Araki,N. Komatsu
  • Cancer Science. 112(2). 2021/02

• Methanol tolerance and acclimation in the anammox process using a gel carrier
  • K. Isaka, T. Osaka, Y. Kimura, N. Iwasaki, S. Tsuneda
  • Biochemical Engineering Journal. 165 . 2021/01

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